MRIQC: individual T1w report

Summary

Subject ID: 052_ControlPre.
Date and time: 2018-05-06, 20:26.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2869538462170966
cnr			4.4860667681824955
efc			0.6049147612489307
fber			79.8055191040039
fwhm	avg		4.00463
fwhm	x		3.77559
fwhm	y		4.35983
fwhm	z		3.87847
icvs	csf		0.22774875036819792
icvs	gm		0.4436401202919656
icvs	wm		0.32861112933983655
inu	med		1.0712498426437378
inu	range		0.31235072910785666
qi	1		0.0
qi	2		0.0010464940819872434
rpve	csf		20.397737579493167
rpve	gm		11.144667054697985
rpve	wm		17.800478280501025
size	x		180
size	y		256
size	z		256
snr	csf		2.5075047818171776
snr	gm		10.597214678559329
snr	total		10.759693543142085
snr	wm		19.174361169049746
snrd	csf		13.010305354401963
snrd	gm		27.428372624259335
snrd	total		27.848656007212256
snrd	wm		43.10729004297547
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.8828252348945873
summary	bg	mad	15.197951316833496
summary	bg	mean	58.7899055480957
summary	bg	median	57.587120056152344
summary	bg	n	3010307.0
summary	bg	p05	35.870133590698245
summary	bg	p95	86.17275772094726
summary	bg	stdv	15.767895698547363
summary	csf	k	0.5719447623526657
summary	csf	mad	122.0854263305664
summary	csf	mean	309.12445068359375
summary	csf	median	301.81500244140625
summary	csf	n	16369.0
summary	csf	p05	127.66331634521487
summary	csf	p95	508.9559020996094
summary	csf	stdv	120.36100006103516
summary	gm	k	0.1541042431132369
summary	gm	mad	58.634681701660156
summary	gm	mean	636.6110229492188
summary	gm	median	636.2874755859375
summary	gm	n	42692.0
summary	gm	p05	537.9849578857422
summary	gm	p95	736.0735687255859
summary	gm	stdv	60.04219436645508
summary	wm	k	1.2731523107208869
summary	wm	mad	45.7367057800293
summary	wm	mean	999.2916870117188
summary	wm	median	1000.0093383789062
summary	wm	n	198485.0
summary	wm	p05	910.933251953125
summary	wm	p95	1081.8647216796874
summary	wm	stdv	52.1533317565918
tpm	overlap	csf	0.19424016773700714
tpm	overlap	gm	0.5087242722511292
tpm	overlap	wm	0.5219957232475281
wm2max			0.696499669544015

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	1c9edfcca425c5f22d9e4c5cb183e75c
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.