MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2869538462170966
cnr4.4860667681824955
efc0.6049147612489307
fber79.8055191040039
fwhmavg4.00463
fwhmx3.77559
fwhmy4.35983
fwhmz3.87847
icvscsf0.22774875036819792
icvsgm0.4436401202919656
icvswm0.32861112933983655
inumed1.0712498426437378
inurange0.31235072910785666
qi10.0
qi20.0010464940819872434
rpvecsf20.397737579493167
rpvegm11.144667054697985
rpvewm17.800478280501025
sizex180
sizey256
sizez256
snrcsf2.5075047818171776
snrgm10.597214678559329
snrtotal10.759693543142085
snrwm19.174361169049746
snrdcsf13.010305354401963
snrdgm27.428372624259335
snrdtotal27.848656007212256
snrdwm43.10729004297547
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.8828252348945873
summarybgmad15.197951316833496
summarybgmean58.7899055480957
summarybgmedian57.587120056152344
summarybgn3010307.0
summarybgp0535.870133590698245
summarybgp9586.17275772094726
summarybgstdv15.767895698547363
summarycsfk0.5719447623526657
summarycsfmad122.0854263305664
summarycsfmean309.12445068359375
summarycsfmedian301.81500244140625
summarycsfn16369.0
summarycsfp05127.66331634521487
summarycsfp95508.9559020996094
summarycsfstdv120.36100006103516
summarygmk0.1541042431132369
summarygmmad58.634681701660156
summarygmmean636.6110229492188
summarygmmedian636.2874755859375
summarygmn42692.0
summarygmp05537.9849578857422
summarygmp95736.0735687255859
summarygmstdv60.04219436645508
summarywmk1.2731523107208869
summarywmmad45.7367057800293
summarywmmean999.2916870117188
summarywmmedian1000.0093383789062
summarywmn198485.0
summarywmp05910.933251953125
summarywmp951081.8647216796874
summarywmstdv52.1533317565918
tpmoverlapcsf0.19424016773700714
tpmoverlapgm0.5087242722511292
tpmoverlapwm0.5219957232475281
wm2max0.696499669544015

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum1c9edfcca425c5f22d9e4c5cb183e75c
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.